> But the "dictionary" entries "keyed by record type" need additional cleanup/parsing before I can use them (which is why I wanted to use BioPython). I was able to use PDBio as described in this discussion: > I'm using BioPython because I want to pull some information out of the PDB headers. I manually installed the MacOSX10.6.sdk from Xcode 4.2 into the appropriate location, but still no luck.
#Xcode for mac 10.6 install
I've been able to install the 10.6 frameworks into both Xcode 4.6.2 and Xcode 5.x, but that still doesn't work.
It seems to be referencing "/Developer/SDKs/MacOSX10.6.sdk", which does not exist in recent versions of Xcode. > The "build" process starts to work, but gets hung up with the error "xcrun: Error: failed to exec real xcrun.
#Xcode for mac 10.6 mac os x
I'm using Mac OS X 10.8.5 with MacPorts installed. I've been following the guidelines posted a couple of years ago: > I've been trying to install BioPython into the Python interpreter embedded within Chimera. On Jan 7, 2014, at 11:55 AM, "Hurt, Darrell (NIH/NIAID) " wrote:
#Xcode for mac 10.6 how to
If instead you mean you want the header values of the EMDB CCP4 binary map files, Chimera reads those and I can tell you how to get them if you are interested. I used it many years ago to find the PDB entries fit to an EMDB map but switched that to use and EMDB web service instead of the XML file. If you mean the XML meta data file provided by EMDB, Chimera does not fetch that because it doesn't need any data it contains currently. I'm not sure what you mean by "EMDB records". But maybe you have other reasons for wanting BioPython in Chimera. Installing BioPython just to do that is hitting a needle with a sledgehammer. If your goal is to get title and doi info from PDB files, it would be much easier to do the minor parsing needed on the records obtained from Chimera. Applications/Xcode.app/Contents/Developer/usr/share/man/man1/xcrun.1Īnd on our Mac 10.6 build machine it is also in /usr/bin Applications/Xcode.app/Contents/Developer/usr/bin/xcrun xcrun is in /usr/bin on my Mac 10.8 system It seems you already figured out all of the above. So that when I recompile parts of Chimera on my Mac 10.8 machine that were originally compiled on Mac 10.6 it can find the 10.6 SDKs.
I have encountered this and on my Mac 10.8 system use a symbollic link And in fact Apple changed the location where SDK files live. But as you point out Mac OS 10.8 (and 10.9) don't have the Mac 10.6 SDK files. So when you try to install a Python module using the Chimera Python and it requires compiling some C or C++ code it attempts to use the same compiler and same settings that Python itself was compiled with to assure that the new compiled module will work with Python. The compilation explicitly specifies MacOSX10.6.sdk and that setting gets put into the Chimera Python configuration files. Messages sorted by: Ĭhimera is compiled on Mac OS 10.6.Next message: running wild with Chimera :-).
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